Software
- bayesbio: Miscellaneous functions for bioinformatics and Bayesian statistics (R package)
- DGCA: Differential Gene Correlation Analysis (R package)
- BRETIGEA: Brain Cell Type Specific Gene Expression Analysis (R package)
- demedify: Demystifying and expanding medical acronyms and terms (Python Reddit bot)
Decision Theory
- The “canon” of common trade-offs across domains
- Classifying trade-offs on the basis of Berkson’s paradox
- My short-list of the most interesting biomedical trade-offs
Gene Expression
- Bayesian transcription start site estimation in sparsely sampled RNA-seq data
- Generating new protein sequences with a character-level recurrent neural network
- Visualizing mouse brain cell type gene expression data
Machine Learning & Medicine
- Technical debt: probably the main roadblack in applying machine learning to medicine
- A mock case of neonatal meningitis
Quantified Self
- Eight years of tracking my life statistics
- Five years of spaced repetition flashcards
- Does whole genome sequencing add value above SNP arrays?
Neuroscience
Rating Systems
