Software

• bayesbio: Miscellaneous functions for bioinformatics and Bayesian statistics (R package)
• DGCA: Differential Gene Correlation Analysis (R package)
• BRETIGEA: Brain Cell Type Specific Gene Expression Analysis (R package)
• demedify: Demystifying and expanding medical acronyms and terms (Python Reddit bot)

Decision Theory

• The “canon” of common trade-offs across domains 
• Classifying trade-offs on the basis of Berkson’s paradox
• My short-list of the most interesting biomedical trade-offs

Gene Expression

• Bayesian transcription start site estimation in sparsely sampled RNA-seq data
• Generating new protein sequences with a character-level recurrent neural network
• Visualizing mouse brain cell type gene expression data

Machine Learning & Medicine 

• Technical debt: probably the main roadblack in applying machine learning to medicine
• A mock case of neonatal meningitis 

Quantified Self 

• Eight years of tracking my life statistics
• Five years of spaced repetition flashcards
• Does whole genome sequencing add value above SNP arrays?

Neuroscience

• Neuron typing
• Lucidity in dementia

Rating Systems

• Patterns of favorite music preferences on Facebook across countries with different GDPs
• Shrinkage estimation of movie directors’ average IMDb rating
• The best books of all time based on shrinkage estimation